ABSTRACT
NAD@tD Phos@tD GraP@tD $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@gapdh, nadD Ki@gapdh, phosD Ki@gapdh, grapD +HKm@gapdh, grapD NAD@tD Phos@tD B13PG@tDL êHKi@gapdh, grapD
Km@gapdh, nadD Ki@gapdh, phosD Kid@gapdh, b13pgDL + Phos@tD GraP@tD NADH@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@gapdh, phosD Ki@gapdh, grapD Ki@gapdh, nadhD +HKm@gapdh, b13pgD Phos@tD B13PG@tD NADH@tDLêHKi@gapdh, b13pgD Km@gapdh, nadhD Ki@gapdh, phosD Kid@gapdh, b13pgDLy{zz;
v@gapdhD := GDH
$$$$$$$$$$$$$$$gdhrd ikjj kcatf@gapdhD GraP@tD NAD@tD Phos@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@gapdh, nadD Ki@gapdh, phosD Ki@gapdh, grapD −
kcatr@gapdhD B13PG@tD NADH@tD $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@gapdh, b13pgD Km@gapdh, nadhD y{zz;
A3.1.7 Phosphoglycerate Kinase
Parameters
Km@pgk, mgadpD = 100∗10^−6; Ki@pgk, mgadpD = 80∗10^−6; Km@pgk, b13pgD = 2∗ 10^−6; Ki@pgk, b13pgD = 1.6∗10^−6; Km@pgk, mgatpD = 1∗ 10^−3; Ki@pgk, mgatpD = 0.186∗10^−3; Km@pgk, p3gaD = 1.1∗10^−3; Ki@pgk, p3gaD = 0.205∗10^−3; PGK = 2.74∗10^−6; kcatf@pgkD = 2290; kcatr@pgkD = 917;
Rate Equation
pgkrd := ikjj1 + MgADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgadpD + B13PG@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, b13pgD + MgADP@tD B13PG@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgadpD Km@pgk, b13pgD + MgATP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgatpD + P3GA@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, p3gaD + MgATP@tD P3GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgatpD Km@pgk, p3gaD y{zz; v@pgkD := PGK$$$$$$$$$$$$$$$pgkrd ikjj kcatf@pgkD B13PG@tD MgADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgadpD Km@pgk, b13pgD −
kcatr@pgkD P3GA@tD MgATP@tD $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@pgk, mgatpD Km@pgk, p3gaD y{zz;
A3.1.8 Phosphoglycerate Mutase
Parameters
Km@pgm, p3gaD = 168∗10^−6; Km@pgm, p2gaD = 25.6∗10^−6; PGM = 410∗ 10^−9; kcatf@pgmD = 0.795∗10^3; kcatr@pgmD = 0.714∗10^3;
Rate Equation
pgmrd := ikjj1 + P3GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@pgm, p3gaD + P2GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@pgm, p2gaD y{zz; v@pgmD := PGM$$$$$$$$$$$$$$$pgmrd ikjj kcatf@pgmD P3GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@pgm, p3gaD − kcatr@pgmD P2GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@pgm, p2gaD y{zz;
A3.1.9 Enolase
Parameters
Ki@eno, p2gaD = 140∗10^−6; Km@eno, p2gaD = 140∗10^−6; Ki@eno, pepD = 110.5∗10^−6; Km@eno, pepD = 110.5∗10^−6; Ki@eno, mgD = 46∗10^−6; Km@eno, mgD = 46∗10^−6; ENO = 0.22∗10^−6; kcatf@enoD = 190; kcatr@enoD = 50;
Rate Equation
enord := ikjj1 + P2GA@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@eno, p2gaD + Mg@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@eno, mgD + PEP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@eno, pepD + P2GA@tD∗ Mg@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@eno, p2gaD Ki@eno, mgD + Mg@tD∗PEP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@eno, pepD Km@eno, mgD y{zz; v@enoD :=
ENO $$$$$$$$$$$$$$$enord
ikjj kcatf@enoD P2GA@tD Mg@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@eno, p2gaD Ki@eno, mgD − kcatr@enoD PEP@tD Mg@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@eno, pepD Km@eno, mgD y{zz;
A3.1.10 Pyruvate Kinase
Parameters
KT@pk, atpD = 3.39∗ 10^−3; KR@pk, pyrD = 2.0∗10^−3; KR@pk, pepD = 0.225∗10^−3; KR@pk, mgatpD = 3.0∗10^−3; KR@pk, mgadpD = 0.474∗10^−3; KR@f16p2D = 5.0∗10^−6; KR@g16p2D = 100∗10^−6; PK = 87.0∗ 10^−9; kcatf@pkD = 1386; kcatr@pkD = 3.26;
Rate Equation
L@pkD := ikjj 10^−6.8$$$$$$$$$$$$$$$$$$$$$$$$$$$$10^−pH1@tD y{zzikjj1 + ATP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KT@pk, atpD y{zz4 ìikjjjjikjj1 + PEP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pepD + Pyr@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pyrD y{zz4ikjj1 + Fru16P2@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@f16p2D + Glc16P2@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@g16p2D y{zz4y{zzzz; pkrd :=ikjj1 + PEP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pepD + MgADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, mgadpD + PEP@tD∗ MgADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pepD KR@pk, mgadpD +
Pyr@tD $$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pyrD + MgATP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, mgatpD + Pyr@tD∗ MgATP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pyrD KR@pk, mgatpD y{zz;
v@pkD := PK$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$H1 + L@pkDL pkrd ikjj kcatf@pkD PEP@tD∗ MgADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, pepD KR@pk, mgadpD − kcatr@pkD Pyr@tD∗ MgATP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$KR@pk, mgatpD KR@pk, pyrD y{zz; A3.1.11 Lactate Dehydrogenase
Parameters
Km@ldh, nadhD = 8.44∗10^−6; Ki@ldh, nadhD = 2.45∗10^−6; Km@ldh, nadD = 0.107∗10^−3; Ki@ldh, nadD = 0.503∗10^−3; Km@ldh, pyrD := 137∗10^−6 ikjj 1 + 10^−6.8ê10^−pH1@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−6.8ê10^−7.2 y{zz;
Ki@ldh, pyrD := 228∗10^−6 ikjj 1 + 10^−6.8ê10^−pH1@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−6.8ê10^−7.2 y{zz; Kid@ldh, pyrD = 0.101∗ 10^−3; Km@ldh, lacD := 1.07∗10^−3 ikjj 1 + 10^−pH1@tDê10^−6.8$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−7.2ê10^−6.8 y{zz; Ki@ldh, lacD := 7.33∗10^−3 ikjj 1 + 10^−pH1@tDê10^−6.8$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−7.2ê10^−6.8 y{zz; LDH = 3.43∗10^−6; kcatf@ldhD = 458; kcatr@ldhD = 115;
Rate Equation
ldhrd :=ikjjikjj1 + Km@ldh, nadhD Pyr@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, pyrD + Km@ldh, nadD Lac@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldh, lacD Ki@ldh, nadD y{zz∗ikjj1 + Pyr@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Kid@ldh, pyrD y{zz + NADH@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD + NAD@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadD + NADH@tD Pyr@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, pyrD + Km@ldh, nadD NADH@tD Lac@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, lacD Ki@ldh, nadD + Km@ldh, nadhD Pyr@tD NAD@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, pyrD Ki@ldh, nadD + Lac@tD NAD@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldh, lacD Ki@ldh, nadD + NADH@tD Pyr@tD Lac@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, pyrD Ki@ldh, lacD + Pyr@tD Lac@tD NAD@tD
$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, pyrD Km@ldh, lacD Ki@ldh, nadD y{zz; v@ldhD := LDH$$$$$$$$$$$$$$$ldhrd ikjj kcatf@ldhD Pyr@tD NADH@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadhD Km@ldh, pyrD − kcatr@ldhD Lac@tD NAD@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Ki@ldh, nadD Km@ldh, lacD y{zz;
A3.1.12 NADPH-Dependent Lactate Dehydrogenase
Parameters
Km@ldhp, pyrD = 4.14∗10^−4; Km@ldhp, lacD = 4.14∗10^−4; kf@ldhpD = 3.46∗ 10^−3; kr@ldhpD = 5.43∗ 10^−7;
Rate Equation
ldhprd := 1 + Pyr@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldhp, pyrD + Lac@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldhp, lacD ; v@ldhpD := 1$$$$$$$$$$$$$$$$ldhprd ikjj kf@ldhpD∗ Pyr@tD∗NADPH@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldhp, pyrD − kr@ldhpD∗Lac@tD∗NADP@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ldhp, lacD y{zz;
A3.2.1 Glucose 6-Phosphate Dehydrogenase
Parameters
k@g6pdh, 1D = 1.1∗10^8; k@g6pdh, 2D = 8.7∗10^2; k@g6pdh, 3D = 2.6∗10^7; k@g6pdh, 4D = 3.0∗10^2; k@g6pdh, 5D = 7.5∗10^2; k@g6pdh, 6D = 2.0∗10^3; k@g6pdh, 7D = 2.2∗10^5; k@g6pdh, 8D = 1.1∗10^9; k@g6pdh, 9D = 1.0∗10^4; k@g6pdh, 10D = 1.4∗ 10^9; G6PDH = 9.3∗10^−8;
Rate Equation
N1@g6pdhD = k@g6pdh, 1D k@g6pdh, 3D k@g6pdh, 5D k@g6pdh, 7D k@g6pdh, 9D;
N2@g6pdhD = k@g6pdh, 2D k@g6pdh, 4D k@g6pdh, 6D k@g6pdh, 8D k@g6pdh, 10D;
D1@g6pdhD = k@g6pdh, 2D k@g6pdh, 9D Hk@g6pdh, 4D k@g6pdh, 6D + k@g6pdh, 4D k@g6pdh, 7D + k@g6pdh, 5D k@g6pdh, 7DL;
D2@g6pdhD = k@g6pdh, 1D k@g6pdh, 9D Hk@g6pdh, 4D k@g6pdh, 6D +
k@g6pdh, 4D k@g6pdh, 7D + k@g6pdh, 5D k@g6pdh, 7DL; D3@g6pdhD = k@g6pdh, 3D k@g6pdh, 5D k@g6pdh, 7D k@g6pdh, 9D; D4@g6pdhD = k@g6pdh, 2D k@g6pdh, 4D k@g6pdh, 6D k@g6pdh, 8D; D5@g6pdhD = k@g6pdh, 2D k@g6pdh, 10D Hk@g6pdh, 4D k@g6pdh, 6D +
k@g6pdh, 5D k@g6pdh, 6D + k@g6pdh, 5D k@g6pdh, 7DL; D6@g6pdhD = k@g6pdh, 1D k@g6pdh, 3D Hk@g6pdh, 5D k@g6pdh, 7D + k@g6pdh, 5D k@g6pdh, 9D +
k@g6pdh, 6D k@g6pdh, 9D + k@g6pdh, 7D k@g6pdh, 9DL; D7@g6pdhD = k@g6pdh, 1D k@g6pdh, 4D k@g6pdh, 6D k@g6pdh, 8D ; D8@g6pdhD = k@g6pdh, 3D k@g6pdh, 5D k@g6pdh, 7D k@g6pdh, 10D; D9@g6pdhD = k@g6pdh, 8D k@g6pdh, 10D Hk@g6pdh, 2D k@g6pdh, 4D + k@g6pdh, 2D k@g6pdh, 5D +
k@g6pdh, 2D k@g6pdh, 6D + k@g6pdh, 4D k@g6pdh, 6DL; D10@g6pdhD = k@g6pdh, 1D k@g6pdh, 3D k@g6pdh, 8D Hk@g6pdh, 5D + k@g6pdh, 6DL; D11@g6pdhD = k@g6pdh, 3D k@g6pdh, 8D k@g6pdh, 10D Hk@g6pdh, 5D + k@g6pdh, 6DL;
v@g6pdhD := G6PDH HN1@g6pdhD Glc6P@tD NADP@tD − N2@g6pdhD P6GL@tD NADPH@tDL êHD1@g6pdhD + D2@g6pdhD NADP@tD + D3@g6pdhD Glc6P@tD + D4@g6pdhD P6GL@tD + D5@g6pdhD NADPH@tD + D6@g6pdhD Glc6P@tD NADP@tD + D7@g6pdhD NADP@tD P6GL@tD + D8@g6pdhD Glc6P@tD NADPH@tD + D9@g6pdhD P6GL@tD NADPH@tD + D10@g6pdhD Glc6P@tD NADP@tD P6GL@tD + D11@g6pdhD P6GL@tD NADPH@tD Glc6P@tDL;
A3.2.2 6-Phosphogluconolactone Hydrolysis
d-Gluconolactonase
Parameters
k@lactonase, 1D = 1.3∗ 10^7; k@lactonase, 2D = 1.0∗ 10^3; k@lactonase, 3D = 2.9∗ 10^1; Lactonase = 14.0∗10^−6;
Rate Equation
Km@lactonase, p6glD =Hk@lactonase, 2D + k@lactonase, 3DL êk@lactonase, 1D; kcatf@lactonaseD = k@lactonase, 3D; v@lactonaseD := Lactonase kcatf@lactonaseD P6GL@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@lactonase, p6glD + P6GL@tD ;
Spontaneous 6-Phosphogluconolactone Hydrolysis
Parameters
k@spontaneouspglhydrolysisD = 7.1∗10^−4;
Rate Equation
v@spontaneouspglhydrolysisD := +k@spontaneouspglhydrolysisD P6GL@tD;
Total 6-Phosphogluconolactone Hydrolysis
v@pglhydrolysisD := v@lactonaseD + v@spontaneouspglhydrolysisD; A3.2.3 6-Phosphogluconate Dehydrogenase
Parameters
k@p6gdh, 1D = 2∗ 1.2∗10^6; k@p6gdh, 2D = 4.1∗10^2; k@p6gdh, 3D = 2∗ 1.0∗10^9; k@p6gdh, 4D = 2.6∗10^4; k@p6gdh, 5D = 4.8∗10^1; k@p6gdh, 6D = 3.0∗10^1; k@p6gdh, 7D = 6.3∗10^2; k@p6gdh, 8D = 3.6∗10^4; k@p6gdh, 9D = 8.0∗10^2; k@p6gdh, 10D = 0.5∗ 4.5∗10^5; k@p6gdh, 11D = 3.0∗ 10^2; k@p6gdh, 12D = 0.5∗ 9.9∗10^6; P6GDH = 2.1∗10^−6;
Rate Equation
N1@p6gdhD = k@p6gdh, 1D k@p6gdh, 3D k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 9D k@p6gdh, 11D;
N2@p6gdhD = k@p6gdh, 2D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 10D k@p6gdh, 12D;
D1@p6gdhD = k@p6gdh, 2D k@p6gdh, 9D k@p6gdh, 11D Hk@p6gdh, 4D k@p6gdh, 6D + k@p6gdh, 4D k@p6gdh, 7D + k@p6gdh, 5D k@p6gdh, 7DL;
D2@p6gdhD = k@p6gdh, 1D k@p6gdh, 9D k@p6gdh, 11D Hk@p6gdh, 4D k@p6gdh, 6D + k@p6gdh, 4D k@p6gdh, 7D + k@p6gdh, 5D k@p6gdh, 7DL;
D3@p6gdhD = k@p6gdh, 3D k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 9D k@p6gdh, 11D;
D4@p6gdhD = k@p6gdh, 2D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 11D;
D5@p6gdhD = k@p6gdh, 2D k@p6gdh, 9D k@p6gdh, 12D Hk@p6gdh, 4D k@p6gdh, 6D + k@p6gdh, 4D k@p6gdh, 7D + k@p6gdh, 5D k@p6gdh, 7DL;
D6@p6gdhD = k@p6gdh, 1D k@p6gdh, 3D
Hk@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 9D + k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 11D + k@p6gdh, 5D k@p6gdh, 9D k@p6gdh, 11D + k@p6gdh, 6D k@p6gdh, 9D k@p6gdh, 11D + k@p6gdh, 7D k@p6gdh, 9D k@p6gdh, 11DL;
D7@p6gdhD = k@p6gdh, 1D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 11D;
D8@p6gdhD = k@p6gdh, 3D k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 9D k@p6gdh, 12D;
D9@p6gdhD = k@p6gdh, 2D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 10D;
D10@p6gdhD = k@p6gdh, 2D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 12D;
D11@p6gdhD = k@p6gdh, 2D k@p6gdh, 10D k@p6gdh, 12D Hk@p6gdh, 4D k@p6gdh, 6D + k@p6gdh, 4D k@p6gdh, 7D + k@p6gdh, 5D k@p6gdh, 7DL;
D12@p6gdhD = k@p6gdh, 1D k@p6gdh, 3D k@p6gdh, 8D k@p6gdh, 11D Hk@p6gdh, 5D + k@p6gdh, 6DL;
D13@p6gdhD = k@p6gdh, 1D k@p6gdh, 3D k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 10D;
D14@p6gdhD = k@p6gdh, 1D k@p6gdh, 4D k@p6gdh, 6D k@p6gdh, 8D k@p6gdh, 10D;
D15@p6gdhD = k@p6gdh, 3D k@p6gdh, 5D k@p6gdh, 7D k@p6gdh, 10D k@p6gdh, 12D;
D16@p6gdhD = k@p6gdh, 8D k@p6gdh, 10D k@p6gdh, 12D Hk@p6gdh, 2D k@p6gdh, 4D + k@p6gdh, 2D k@p6gdh, 5D + k@p6gdh, 2D k@p6gdh, 6D + k@p6gdh, 4D k@p6gdh, 6DL;
D17@p6gdhD = k@p6gdh, 1D k@p6gdh, 3D k@p6gdh, 8D k@p6gdh, 10D Hk@p6gdh, 5D + k@p6gdh, 6DL;
D18@p6gdhD = k@p6gdh, 3D k@p6gdh, 8D k@p6gdh, 10D k@p6gdh, 12D Hk@p6gdh, 5D + k@p6gdh, 6DL;
v@p6gdhD := P6GDH HN1@p6gdhD P6G@tD NADP@tD − N2@p6gdhD CO2@tD Ru5P@tD NADPH@tDLêHD1@p6gdhD + D2@p6gdhD NADP@tD + D3@p6gdhD P6G@tD + D4@p6gdhD CO2@tD + D5@p6gdhD NADPH@tD + D6@p6gdhD P6G@tD NADP@tD + D7@p6gdhD NADP@tD CO2@tD + D8@p6gdhD P6G@tD NADPH@tD + D9@p6gdhD CO2@tD Ru5P@tD + D10@p6gdhD CO2@tD NADPH@tD + D11@p6gdhD Ru5P@tD NADPH@tD + D12@p6gdhD P6G@tD NADP@tD CO2@tD + D13@p6gdhD P6G@tD NADP@tD Ru5P@tD + D14@p6gdhD NADP@tD CO2@tD Ru5P@tD + D15@p6gdhD P6G@tD Ru5P@tD NADPH@tD + D16@p6gdhD CO2@tD Ru5P@tD NADPH@tD +
D17@p6gdhD P6G@tD NADP@tD CO2@tD Ru5P@tD + D18@p6gdhD P6G@tD CO2@tD Ru5P@tD NADPH@tDL;
A3.2.4 Glutathione Reductase
Parameters
k@gssgr, 1D = 8.5∗10^7; k@gssgr, 2D = 5.1∗10^2; k@gssgr, 3D = 1.0∗10^9; k@gssgr, 4D = 7.2∗10^4; k@gssgr, 5D = 8.1∗10^2; k@gssgr, 6D = 1.0∗10^3; k@gssgr, 7D = 1.0∗10^6; k@gssgr, 8D = 5.0∗10^7; k@gssgr, 9D = 1.0∗10^6; k@gssgr, 10D = 5.0∗ 10^7; k@gssgr, 11D = 7.0∗ 10^3; k@gssgr, 12D = 1.0∗ 10^8; GSSGR = 1.25∗10^−7;
Rate Equation
N1@gssgrD = k@gssgr, 1D k@gssgr, 3D k@gssgr, 5D k@gssgr, 7D k@gssgr, 9D k@gssgr, 11D;
N2@gssgrD = k@gssgr, 2D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 10D k@gssgr, 12D; D1@gssgrD = k@gssgr, 2D Hk@gssgr, 4D k@gssgr, 6D + k@gssgr, 4D k@gssgr, 7D +
k@gssgr, 5D k@gssgr, 7DL k@gssgr, 9D k@gssgr, 11D; D2@gssgrD = k@gssgr, 1D Hk@gssgr, 4D k@gssgr, 6D +
k@gssgr, 4D k@gssgr, 7D + k@gssgr, 5D k@gssgr, 7DL k@gssgr, 9D k@gssgr, 11D;
D3@gssgrD = k@gssgr, 3D k@gssgr, 5D k@gssgr, 7D k@gssgr, 9D k@gssgr, 11D;
D4@gssgrD = k@gssgr, 2D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 11D;
D5@gssgrD = k@gssgr, 2DHk@gssgr, 4D k@gssgr, 6D + k@gssgr, 4D k@gssgr, 7D + k@gssgr, 5D k@gssgr, 7DL k@gssgr, 9D k@gssgr, 12D;
D6@gssgrD = k@gssgr, 1D k@gssgr, 3DHk@gssgr, 5D k@gssgr, 7D k@gssgr, 9D + k@gssgr, 5D k@gssgr, 7D k@gssgr, 11D + k@gssgr, 5D k@gssgr, 9D k@gssgr, 11D +
k@gssgr, 6D k@gssgr, 9D k@gssgr, 11D + k@gssgr, 7D k@gssgr, 9D k@gssgr, 11DL;
D7@gssgrD = k@gssgr, 1D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 11D;
D8@gssgrD = k@gssgr, 3D k@gssgr, 5D k@gssgr, 7D k@gssgr, 9D k@gssgr, 12D;
D9@gssgrD = k@gssgr, 2D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 10D;
D10@gssgrD = k@gssgr, 2D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 12D;
D11@gssgrD = k@gssgr, 2DHk@gssgr, 4D k@gssgr, 6D + k@gssgr, 4D k@gssgr, 7D + k@gssgr, 5D k@gssgr, 7DL k@gssgr, 10D k@gssgr, 12D;
D12@gssgrD = k@gssgr, 1D k@gssgr, 3D Hk@gssgr, 5D + k@gssgr, 6DL k@gssgr, 8D k@gssgr, 11D; D13@gssgrD = k@gssgr, 1D k@gssgr, 3D k@gssgr, 5D k@gssgr, 7D k@gssgr, 10D;
D14@gssgrD = k@gssgr, 1D k@gssgr, 4D k@gssgr, 6D k@gssgr, 8D k@gssgr, 10D;
D15@gssgrD = k@gssgr, 3D k@gssgr, 5D k@gssgr, 7D k@gssgr, 10D k@gssgr, 12D;
D16@gssgrD = Hk@gssgr, 2D k@gssgr, 4D + k@gssgr, 2D k@gssgr, 5D + k@gssgr, 2D k@gssgr, 6D + k@gssgr, 4D k@gssgr, 6DL
k@gssgr, 8D k@gssgr, 10D k@gssgr, 12D; D17@gssgrD = k@gssgr, 1D k@gssgr, 3DHk@gssgr, 5D + k@gssgr, 6DL k@gssgr, 8D k@gssgr, 10D; D18@gssgrD = k@gssgr, 3D Hk@gssgr, 5D + k@gssgr, 6DL k@gssgr, 8D k@gssgr, 10D k@gssgr, 12D;
v@gssgrD := HGSSGRHN1@gssgrD NADPH@tD GSSG@tD − N2@gssgrD GSH@tD2 NADP@tD LLêHD1@gssgrD + D4@gssgrD GSH@tD + D9@gssgrD GSH@tD2 + D3@gssgrD GSSG@tD + D5@gssgrD NADP@tD + D10@gssgrD GSH@tD NADP@tD + D11@gssgrD GSH@tD NADP@tD + D16@gssgrD GSH@tD2 NADP@tD + D8@gssgrD GSSG@tD NADP@tD + D15@gssgrD GSH@tD GSSG@tD NADP@tD + D18@gssgrD GSH@tD2 GSSG@tD NADP@tD + D2@gssgrD NADPH@tD + D7@gssgrD GSH@tD NADPH@tD + D14@gssgrD GSH@tD2 NADPH@tD + D6@gssgrD GSSG@tD NADPH@tD + D12@gssgrD GSH@tD GSSG@tD NADPH@tD + D13@gssgrD GSH@tD GSSG@tD NADPH@tD + D17@gssgrD GSH@tD2 GSSG@tD NADPH@tDL;
A3.2.5 Ribulose-5-Phosphate Epimerase
Parameters
k@ru5pe, 1D = 3.91∗ 10^6; k@ru5pe, 2D = 4.38∗ 10^2; k@ru5pe, 3D = 3.05∗ 10^2; k@ru5pe, 4D = 1.49∗ 10^6; Ru5PE = 4.22∗ 10^−6;
Rate Equation
Km@ru5pe, ru5pD = Hk@ru5pe, 2D + k@ru5pe, 3DLê k@ru5pe, 1D; Km@ru5pe, xu5pD = Hk@ru5pe, 2D + k@ru5pe, 3DLê k@ru5pe, 4D; kcatf@ru5peD = k@ru5pe, 3D; kcatr@ru5peD = k@ru5pe, 2D; ru5perd := 1 + Ru5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ru5pe, ru5pD + Xu5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ru5pe, xu5pD ; v@ru5peD :=
Ru5PE $$$$$$$$$$$$$$$$$$$ru5perd
ikjj kcatf@ru5peD Ru5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ru5pe, ru5pD − kcatr@ru5peD Xu5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@ru5pe, xu5pD y{zz ; A3.2.6 Ribose-5-Phosphate Isomerase
Parameters
k@r5pi, 1D = 6.09∗10^4; k@r5pi, 2D = 3.33∗10^1; k@r5pi, 3D = 1.42∗10^1; k@r5pi, 4D = 2.16∗10^4; R5PI = 1.42∗10^−5;
Rate Equation
Km@r5pi, ru5pD = Hk@r5pi, 2D + k@r5pi, 3DLêk@r5pi, 1D; Km@r5pi, rib5pD = Hk@r5pi, 2D + k@r5pi, 3DLê k@r5pi, 4D; kcatf@r5piD = k@r5pi, 3D; kcatr@r5piD = k@r5pi, 2D; r5pird := 1 + Ru5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@r5pi, ru5pD + Xu5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@r5pi, rib5pD ; v@r5piD :=
R5PI $$$$$$$$$$$$$$$$r5pird
ikjj kcatf@r5piD Ru5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@r5pi, ru5pD − kcatr@r5piD Rib5P@tD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$Km@r5pi, rib5pD y{zz ; A3.2.7 Transketolase
Parameters
k@tk, 1D = 2.16∗10^5; k@tk, 2D = 3.8∗10^1; k@tk, 3D = 3.4∗10^1; k@tk, 4D = 1.56∗10^5; k@tk, 5D = 3.29∗10^5;
k@tk, 6D = 1.75∗10^2; k@tk, 7D = 4.0∗10^1; k@tk, 8D = 4.48∗10^4; k@tk, 9D = 2.24∗10^6; k@tk, 10D = 1.75∗ 10^2; k@tk, 11D = 4.0∗10^1; k@tk, 12D = 2.13∗ 10^4;
Rate Equations
v@tk1D := +k@tk, 1D∗TK@tD∗Xu5P@tD − k@tk, 2D∗TK$Xu5P@tD ; v@tk2D := +k@tk, 3D∗TK$Xu5P@tD − k@tk, 4D∗TKG@tD∗GraP@tD ; v@tk3D := +k@tk, 5D∗TKG@tD∗Rib5P@tD − k@tk, 6D∗TKG$Rib5P@tD; v@tk4D := +k@tk, 7D∗TKG$Rib5P@tD − k@tk, 8D∗TK@tD∗Sed7P@tD; v@tk5D := +k@tk, 9D∗TKG@tD∗Ery4P@tD − k@tk, 10D∗TKG$Ery4P@tD; v@tk6D := +k@tk, 11D∗ TKG$Ery4P@tD − k@tk, 12D∗TK@tD∗Fru6P@tD;
A3.2.8 Transaldolase
Parameters
k@ta, 1D = 5.8∗10^5; k@ta, 2D = 4.53∗10^1; k@ta, 3D = 1.63∗10^1; k@ta, 4D = 1.01∗10^6; k@ta, 5D = 4.9∗10^5; k@ta, 6D = 6.0∗10^1; k@ta, 7D = 1.7∗10^1; k@ta, 8D = 7.9∗10^4; TA = 0.69∗ 10^−6;
Rate Equations
N1@taD = k@ta, 1D k@ta, 3D k@ta, 5D k@ta, 7D; N2@taD = k@ta, 2D k@ta, 4D k@ta, 6D k@ta, 8D; D1@taD = k@ta, 1D k@ta, 3D Hk@ta, 6D + k@ta, 7DL; D2@taD = k@ta, 5D k@ta, 7D H k@ta, 2D + k@ta, 3DL; D3@taD = k@ta, 2D k@ta, 4D Hk@ta, 6D + k@ta, 7DL; D4@taD = k@ta, 6D k@ta, 8D H k@ta, 2D + k@ta, 3DL; D5@taD = k@ta, 1D k@ta, 5D Hk@ta, 3D + k@ta, 7DL; D6@taD = k@ta, 4D k@ta, 8D Hk@ta, 2D + k@ta, 6DL; D7@taD = k@ta, 5D k@ta, 8D H k@ta, 2D + k@ta, 3DL; D8@taD = k@ta, 1D k@ta, 4D Hk@ta, 6D + k@ta, 7DL; v@taD := TA HN1@taD Sed7P@tD GraP@tD − N2@taD Ery4P@tD Fru6P@tDL êHD1@taD Sed7P@tD + D2@taD GraP@tD +
D3@taD Ery4P@tD + D4@taD Fru6P@tD + D5@taD Sed7P@tD GraP@tD + D6@taD Ery4P@tD Fru6P@tD + D7@taD GraP@tD Fru6P@tD + D8@taD Sed7P@tD Ery4P@tDL;
A3.3.1 2,3-Bisphosphoglycerate Synthase-Phosphatase
Parameters
k@bpgsp, 1D := 0.8∗ 10^8 ikjj 1 + 10^−6.8ê10^−7.20$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−6.8ê10^−pH1@tD y{zz; k@bpgsp, 2D := 4.0∗ 10^2; k@bpgsp, 3D := 9.9 ikjj 1 + H10^−7.2ê10^−7.17L^4$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + H10^−pH1@tDê10^−7.17L^4 y{zz; k@bpgsp, 4D := 1.85∗10^8 ikjj 1 + H10^−7.2ê10^−7.17L^4$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + H10^−pH1@tDê 10^−7.17L^4 y{zz; k@bpgsp, 5D = 1.0∗10^8; k@bpgsp, 6D := 1 ∗10^3 ikjj 1 + H10^−7.2ê10^−7.17L^4$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + H10^−pH1@tDê 10^−7.17L^4 y{zz; k@bpgsp, 7D = 1∗ 10^3; k@bpgsp, 8D = 1∗ 10^4; k@bpgsp, 9D = 0.55; k@bpgsp, 10D = 1.979∗10^3; k@bpgsp, 11D = 1 ∗10^−2; k@bpgsp, 12D = 1 ∗10^3; k@bpgsp, 13D := 1.8∗10^6 ikjj 1 + 10^−6.8ê10^−7.20$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−6.8ê10^−pH1@tD y{zz; k@bpgsp, 14D = 1.0∗ 10^9; k@bpgsp, 15D = 6.1∗ 10^5; k@bpgsp, 16D = 0.19;
Rate Equations
v@bpgsp1D := +k@bpgsp, 1D ∗BPGSP@tD B13PG@tD − k@bpgsp, 2D∗BPGSP$B13PG@tD;
v@bpgsp2D := +k@bpgsp, 3D∗BPGSP$B13PG@tD; v@bpgsp3D := +k@bpgsp, 4D∗BPGSPP@tD∗P3GA@tD −
k@bpgsp, 5D∗ BPGSPP$P3GA@tD; v@bpgsp4D := +k@bpgsp, 6D∗BPGSPP@tD∗P2GA@tD −
k@bpgsp, 7D∗ BPGSPP$P2GA@tD; v@bpgsp5D := +k@bpgsp, 8D∗BPGSPP$P3GA@tD −
k@bpgsp, 9D∗ BPGSP$B23PG@tD; v@bpgsp6D := +k@bpgsp, 10D∗BPGSPP$P2GA@tD −
k@bpgsp, 11D ∗BPGSP$B23PG@tD;
v@bpgsp7D := +k@bpgsp, 12D∗BPGSP$B23PG@tD − k@bpgsp, 13D ∗BPGSP@tD∗B23PG@tD;
v@bpgsp8D := +k@bpgsp, 14D∗BPGSPP@tD∗Phos@tD − k@bpgsp, 15D ∗BPGSPP$Phos@tD;
v@bpgsp9D := k@bpgsp, 16D∗BPGSPP$Phos@tD; A3.4 Energy Consumption and Oxidative Reactions
A3.4.1 Adenylate Kinase
Parameters
K@hampD = 3.09∗ 10^6; K@kampD = 1.8; k@ak, 1D = 4.3∗10^3 H1 + 10^−pH1@tD∗K@hadpD + k@+1D∗K@kadpDL;
k@ak, 2D = 1.4∗10^3 H1 + 10^−pH1@tD∗K@hampD + k@+1D∗K@kampDL; Rate Equation
v@akD := +k@ak, 1D ∗ MgADP@tD∗ ADP@tD − k@ak, 2D MgATP@tD AMP@tD; A3.4.2 ATP Consuming Processes
Parameters
k@atpaseD := 5.85∗ 10^−4; Rate Equation
v@atpaseD := +k@atpaseD MgATP@tD; A3.4.3 Glutathione Oxidation
Parameters
k@oxD := 3.4∗ 10^−5; Rate Equation
v@oxD := k@oxD GSH@tD; A3.4.4 Non-Glycolytic NADH Consumption
Parameters
k@oxNADHD := 16.3∗ 10^−3; Rate Equation
v@oxnadhD := k@oxNADHD∗NADH@tD;
A3.5.1 Pyruvate Transport
Parameters
k@pyrtransport, iD = 1.8∗10^−2; k@pyrtransport, oD := k@pyrtransport, iDêr@tD∗ Vole ê Voli;
Rate Equation
v@pyrtransportD := +k@pyrtransport, oD∗Pyr@tD∗ Voli − k@pyrtransport, iD∗Pyre@tD∗ Vole;
A3.5.2 Lactate Transport
Parameters
k@lactransport, iD = 3.6∗10^−3; Keq@lactransportD :=H1 + 10^HpH1@tD − 3.73LLêH1 + 10^HpH1@tD − 3.73Lêr@tDL; k@lactransport, oD := k@lactransport, iDê Keq@lactransportD∗ Vole ê Voli;
Rate Equation
v@lactransportD := +k@lactransport, oD∗Lac@tD∗ Voli − k@lactransport, iD ∗Lace@tD∗ Vole;
A3.5.3 Phosphate Transport
Parameters
k@phostransport, iD = 5.6∗10^−4; k@phostransport, oD := k@phostransport, iDêKeq@phostransportD∗ Vole ê Voli;
Keq@phostransportD := H1 + 10^HpH1@tD − 6.75LLêH1êr@tD + 10^HpH1@tD − 6.75Lêr@tD^2L; Rate Equation
v@phostransportD := +k@phostransport, oD∗Phos@tD∗ Voli − k@phostransport, iD∗Phose@tD∗ Vole;
A3.6.1 MgATP
Parameters
K@mgatpD = 4.32∗10^4; K@hatpD = 9.07∗ 10^6; K@mghatpD = 7.48∗10^2; K@katpD = 14; k@mgatp, aD := 3.12∗10^7 ∗8.4∗10^−5 ikjj K@mgatpD + 10^−pH1@tD K@hatpD K@mghatpD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−pH1@tD K@hatpD + k@+1D K@katpD y{zz; k@mgatp, dD = 1.2∗10^3;
Rate Equation
v@mgatpD := +k@mgatp, aD∗ ATP@tD∗ Mg@tD − k@mgatp, dD∗ MgATP@tD; A3.6.2 MgADP
Parameters
K@mgadpD = 3.29∗10^3; K@hadpD = 5.42∗ 10^6; K@mghadpD = 1.07∗10^2; K@kadpD = 4.8; k@mgadp, aD := 2.76∗10^6 ∗6.2∗10^−4 ikjj K@mgadpD + 10^−pH1@tD K@hadpD K@mghadpD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−pH1@tD K@hadpD + k@+1D K@kadpD y{zz; k@mgadp, dD = 1.2∗10^3;
Rate Equation
v@mgadpD := +k@mgadp, aD∗ ADP@tD∗ Mg@tD − k@mgadp, dD∗ MgADP@tD; A3.6.3 Mg2,3-BPG
Parameters
K@mgbpgD = 7.41∗10^3; K@hbpgD = 1.62∗ 10^8; K@mghbpgD = 5.13∗10^2; K@h2bpgD = 4.27∗10^6; K@kbpgD = 85.1; K@khbpgD = 8.9; mgbpgphf :=
3.2∗10^−3 HK@mgbpgD + 10^−pH1@tD K@hbpgD K@mghbpgDLêH1 + 10^−pH1@tD K@hbpgD + 10^−H2∗pH1@tDL K@hbpgD K@h2bpgD + k@+1D K@kbpgD + k@+1D∗10^−pH1@tD K@hbpgD K@khbpgDL;
k@mgbpg, aD := 8.04∗10^5 ∗ mgbpgphf; k@mgbpg, dD = 1.2∗10^3;
Rate Equation
v@mgb23pgD := +k@mgbpg, aD ∗B23PG@tD∗ Mg@tD − k@mgbpg, dD∗ Mg$B23PG@tD;
A3.6.4 Mg1,3-BPG
Parameters
k@mgb13pg, aD := 2.28∗ 10^5 ∗ mgbpgphf; k@mgb13pg, dD = 1.2∗10^3;
Rate Equation
v@mgb13pgD := +k@mgb13pg, aD∗ B13PG@tD∗ Mg@tD − k@mgb13pg, dD∗ Mg$B13PG@tD;
A3.6.5 MgFructose (1,6)-Bisphosphate
Parameters
K@mgfru16p2D = 3.63∗10^2; K@hfD = 7.56∗ 10^6; K@mghfD = 8.9∗10^1; K@h2fD = 1.12∗10^6; K@kfD = 10.7; K@khfD = 3.3; mgfphf := 8.3∗10^−3∗HHK@mgfru16p2D + 10^−pH1@tD K@hfD K@mghfDL êH1 + 10^−pH1@tD K@hfD + 10^−H2∗ pH1@tDL K@hfD K@h2fD +
k@+1D K@kfD + k@+1D∗10^−pH1@tD K@hfD K@khfDLL; k@mgf16p2, aD := 4.80∗10^5 ∗ mgfphf; k@mgf16p2, dD = 1.2∗10^3;
Rate Equation
v@mgfru16p2D := +k@mgf16p2, aD∗Fru16P2@tD∗ Mg@tD − k@mgf16p2, dD∗ Mg$Fru16P2@tD;
A3.6.6 MgGlucose (1,6)-Bisphosphate
Rate Equation
v@mgglc16p2D := +k@mgf16p2, aD∗Glc16P2@tD∗ Mg@tD − k@mgf16p2, dD∗ Mg$Glc16P2@tD;
A3.6.7 MgPhosphate
Parameters
K@hphosD = 5.68∗10^6; K@kphosD = 3.0; k@mgphos, aD := 4.08∗10^4 ∗ 1 + 10^−7.2 K@hphosD + 0.15 K@kphosD$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + 10^−pH1@tD K@hphosD + k@+1D K@kphosD ;
k@mgphos, dD = 1.2∗ 10^3; Rate Equation
v@mgphosD := +k@mgphos, aD∗Phos@tD∗ Mg@tD − k@mgphos, dD∗ Mg$Phos@tD;
A3.7 pH Depedendence of Hb-Metabolite Binding Ka@hbD = 10^−6.6; hbphf := 1 + H2 Ka@hbDê10^−7.2L + HKa@hbDê 10^−7.2L^2$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$1 + H2 Ka@hbDê10^−pH1@tDL + HKa@hbDê 10^−pH1@tDL^2 ;
A3.8.1 Hb-MgATP
Parameters
k@hbmgatp, aD := 4.68∗ 10^4∗hbphf; k@hbmgatp, dD = 1.2∗10^3;
Rate Equation
v@hbmgatpD := +k@hbmgatp, aD∗ Hb@tD∗ MgATP@tD − k@hbmgatp, dD∗Hb$MgATP@tD;
A3.8.2 Hb-ATP
Parameters
k@hbatp, aD := 4.32∗10^5 ∗hbphf; k@hbatp, dD = 1.2∗10^3;
Rate Equation
v@hbatpD := +k@hbatp, aD∗ ATP@tD∗Hb@tD − k@hbatp, dD∗Hb$ATP@tD; A3.8.3 Hb-ADP
Parameters
k@hbadp, aD := 3.0∗ 10^5∗hbphf; k@hbadp, dD = 1.2∗10^3;
Rate Equation
v@hbadpD := +k@hbadp, aD∗ ADP@tD∗Hb@tD − k@hbadp, dD∗Hb$ADP@tD; A3.8.4 Hb-23BPG
Parameters
k@hbbpg, aD := 3.0∗ 10^5∗hbphf; k@hbbpg, dD = 1.2∗10^3;
Rate Equation
v@hbbpgD := +k@hbbpg, aD∗ Hb@tD ∗B23PG@tD − k@hbbpg, dD∗Hb$B23PG@tD;
A3.8.5 Hb-13BPG
Parameters
k@hbb13pg, aD := 3.80∗ 10^5∗hbphf; k@hbb13pg, dD = 1.2∗10^3;
Rate Equation
v@hbb13pgD := +k@hbb13pg, aD ∗Hb@tD∗B13PG@tD − k@hbb13pg, dD∗Hb$B13PG@tD
A3.9.1 deoxyHb-MgATP
Parameters
k@hbdmgatp, aD := 1.68∗10^5 ∗hbphf; k@hbdmgatp, dD = 1.2∗10^3; v@hbdmgatpD := +k@hbdmgatp, aD∗Hbd@tD∗ MgATP@tD −
k@hbdmgatp, dD∗ Hbd$MgATP@tD; A3.9.2 deoxyHb-ATP
Parameters
k@hbdatp, aD := 3.12∗10^6∗hbphf; k@hbdatp, dD = 1.2∗ 10^3;
Rate Equation
v@hbdatpD := +k@hbdatp, aD ∗ ATP@tD∗Hbd@tD − k@hbdatp, dD∗Hbd$ATP@tD;
A3.9.3 deoxyHb-ADP
Parameters
k@hbdadp, aD := 1.44∗10^6∗hbphf; k@hbdadp, dD = 1.2∗ 10^3;
Rate Equation
v@hbdadpD := +k@hbdadp, aD ∗ ADP@tD∗Hbd@tD − k@hbdadp, dD∗Hbd$ADP@tD;
A3.9.4 deoxyHb-23BPG
Parameters
k@hbdbpg, aD := 6.00∗10^6∗hbphf; k@hbdbpg, dD = 1.2∗ 10^3;
Rate Equation
v@hbdbpgD := +k@hbdbpg, aD ∗Hbd@tD∗B23PG@tD − k@hbdbpg, dD∗Hbd$B23PG@tD;
A3.9.5 deoxyHb-Fructose (1,6)-bisphosphate
Parameters
k@hbdfbp, aD := 1.21∗10^6∗hbphf; k@hbdfbp, dD = 1.2∗ 10^3;
Rate Equation
v@hbdfbpD := +k@hbdfbp, aD∗Hbd@tD∗Fru16P2@tD − k@hbdfbp, dD ∗Hbd$Fru16P2@tD;
A3.9.6 deoxyHb-13BPG
Parameters
k@hbdb13pg, aD := 1.86∗10^6 ∗hbphf; k@hbdb13pg, dD = 1.2∗10^3;
Rate Equation
v@hbdb13pgD := +k@hbdb13pg, aD∗Hbd@tD∗B13PG@tD − k@hbdb13pg, dD∗ Hbd$B13PG@tD;
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