ABSTRACT
Generation of stoichiometric matrix based on the list of the reactions describing the system;
Automatic analysis of the stoichiometric matrix;
Automatic generation of the systems of ordinary differential equations and conservation laws based on the stoichiometric matrix;
Calculation of functional dependencies defined explicitly;
Numerical solution of nonlinear ODE systems and visualisation of the solution;
Calculation of functional dependencies defined implicitly as a system of algebraic equations (generally nonlinear);
Automatic search of optimal values of the parameters of a system based on the experimental data (fitting);
Analysis of stability of the dynamic system (bifurcation) and calculation of the control coefficients as defined in metabolic control analysis.
