ABSTRACT

DNA and RNA extraction methods from a variety of tissues and samples are now routine, including extraction from single cells. Many methods are now automated. Sequencing efficiency has reached the point where it is now possible to obtain gigabases of data, both quickly and inexpensively. Such methods permit the identification of gene versions, including those associated with disease (e.g. small nucleotide polymorphism analyses, or SNPs). The general public as well as clinicians can now access a wide variety of literature on the molecular bases of diseases, allowing them to better assess disease risks and treatments. This volume concentrates on medically-focused methods, and therefore the major audience will be medical professionals, students, and those involved in medically-related research endeavors. There are also papers in this volume dealing specifically with methods developed to analyze large sequence data sets. Many methods reviewed herein are more broadly applicable to other fields in biology, chemistry, bioinformatics, and bioengineering, and are intended for a broad readership.

Key Features

  • Summarizes nucleic acid extractions from a wide variety of tissues and cells
  • Describes processes of nucleic acid preservation
  • Reviews forensic sampling, detection of nucleic acids, and delivery of nucleic acids to multicellular organisms
  • Provides essential guidance for sequencing, sequence analysis, database searches, and phylogenetic analyses
  • Includes additional methods useful for analysis of nucleic acids and proteins

Related Titles

DeSalle, et al. Phylogenomics: A Primer (ISBN 978-0-3670-2849-7).

Jennings, W. B. Phylogenomic Data Acquisition: Principles and Practice (ISBN 978-0-3678-6980-9).

Wang, X. Next-Generation Sequencing Data Analysis (ISBN 978-1-4822-1788-9)

Sung, W.-K. Algorithms for Next-Generation Sequencing (ISBN 978-0-3676-5797-0)

chapter 5|22 pages

Forensic DNA Samples

Collection and Handling

chapter 6|18 pages

DNA Preservation

chapter 7|6 pages

RNA Storage

chapter 9|10 pages

Handheld Nucleic Acid Analyzer

chapter 12|6 pages

LightUp® Probes

chapter 13|8 pages

Invader® Assay

chapter 14|10 pages

Laser-Capture Microdissection

chapter 15|8 pages

Helper-Dependent Adenoviral Vectors

chapter 16|10 pages

Retroviral Vectors

chapter 19|8 pages

Automated DNA Sequencing

chapter 20|8 pages

DNA Sequencing Methods

chapter 23|12 pages

Accessing Genomic Databases

chapter 25|10 pages

DNannotator

Annotation Software Tool Kit for Regional Genomic Sequences

chapter 26|8 pages

ESTAnnotator

A Tool for High-Throughput EST Annotation

chapter 27|14 pages

The Basics of Omics

chapter 28|6 pages

Ribotyping

chapter 29|8 pages

Forensic DNA Typing

Y Chromosome

chapter 30|8 pages

Forensic Identification

An Overview on Molecular Diagnostic Technology

chapter 32|10 pages

Heteroduplex Analysis (HA)

chapter 33|8 pages

NEBcutter

A Program to Cleave DNA with Restriction Enzymes