ABSTRACT

Quantitative bioimaging is a broad interdisciplinary field that exploits tools from biology, chemistry, optics, and statistical data analysis for the design and implementation of investigations of biological processes. Instead of adopting the traditional approach of focusing on just one of the component disciplines, this textbook provides a unique introduction to quantitative bioimaging that presents all of the disciplines in an integrated manner. The wide range of topics covered include basic concepts in molecular and cellular biology, relevant aspects of antibody technology, instrumentation and experimental design in fluorescence microscopy, introductory geometrical optics and diffraction theory, and parameter estimation and information theory for the analysis of stochastic data.

Key Features include:

  • Comprises four parts, the first of which provides an overview of the topics that are developed from fundamental principles to more advanced levels in the other parts.
  • Presents in the second part an in-depth introduction to the relevant background in molecular and cellular biology and in physical chemistry, which should be particularly useful for students without a formal background in these subjects.
  • Provides in the third part a detailed treatment of microscopy techniques and optics, again starting from basic principles.
  • Introduces in the fourth part modern statistical approaches to the determination of parameters of interest from microscopy data, in particular data generated by single molecule microscopy experiments.
  • Uses two topics related to protein trafficking (transferrin trafficking and FcRn-mediated antibody trafficking) throughout the text to motivate and illustrate microscopy techniques.

An online appendix providing the background and derivations for various mathematical results presented or used in the text is available at https://www.routledge.com/9781138598980.

part I|40 pages

Introduction

chapter 41|2 pages

Then and Now

chapter 163|12 pages

Basics of Microscopy Techniques

chapter |2 pages

Notes

chapter |2 pages

Exercises

part II|86 pages

Biology and Chemistry

chapter 5|20 pages

From genes to proteins

chapter 6|12 pages

Antibodies

chapter 8|16 pages

Principles of Fluorescence

chapter 9|14 pages

Cells

chapter |4 pages

Notes

chapter |2 pages

Exercises

part III|136 pages

Optics and Microscopy

chapter 13010|24 pages

Microscope Designs

chapter 11|31 pages

Microscopy Experiments

chapter 18612|18 pages

Detectors

chapter 13|18 pages

Geometrical Optics

chapter 14|32 pages

Diffraction

chapter |4 pages

Notes

chapter |4 pages

Exercises

part IV|188 pages

Data Analysis

chapter 26615|25 pages

From Photons to Image: Data Models

chapter 29216|20 pages

Parameter Estimation

chapter 20|16 pages

Resolution

chapter 21|16 pages

Deconvolution

chapter 22|12 pages

Spatial Statistics

chapter |6 pages

Notes

chapter |6 pages

Exercises