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      Chapter

      Pairwise Computations on the Cell Processor with Applications in Computational Biology
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      Chapter

      Pairwise Computations on the Cell Processor with Applications in Computational Biology

      DOI link for Pairwise Computations on the Cell Processor with Applications in Computational Biology

      Pairwise Computations on the Cell Processor with Applications in Computational Biology book

      Pairwise Computations on the Cell Processor with Applications in Computational Biology

      DOI link for Pairwise Computations on the Cell Processor with Applications in Computational Biology

      Pairwise Computations on the Cell Processor with Applications in Computational Biology book

      ByAbhinav Sarje, Jaroslaw Zola, Srinivas Aluru
      BookScientific Computing with Multicore and Accelerators

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      Edition 1st Edition
      First Published 2010
      Imprint CRC Press
      Pages 32
      eBook ISBN 9780429104244
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      ABSTRACT

      All-pairs computations occur in numerous and diverse applications across many areas. In many-body simulations and molecular dynamics, computation of pairwise gravitational or electrostatic forces is needed to study system evolution [16]. A similar scenario occurs in computational electromagnetics except that the field is sampled in multiple directions, turning this into a vector computation [15]. In the radiosity method in computer graphics, a scene is divided into patches and the reflection and refraction of light between every pair of patches is of interest to compute the equilibrium light energy distribution [14]. In computational systems biology, correlations between pairs of genes are sought based on their expression levels over a large set of observations [32]. Clustering algorithms typically use a distance metric and use all-pairs distances to guide the clustering process [6]. While the details vary, common to these applications is computation between all pairs of entities from a given set.

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