ABSTRACT

Sfold-prediction o f RNA secondary structure

https://sfold.wadsworth.org

RNAStudio-various tools for analyzing https://bibiserv.techfak.uni-bielefeld.de/bibi/ RNA Tools_RNA_Studio.html

SCOR-structural classification of RNA + https://scor.berkeley.edu 2D/3D RNA preiction https://www.bioinfo.rpi.edu/~zukerm/rna/

node3.html

ModeRNA-Comparative modeling of RNA tertiary structures and modifications

https://www.genesilico.pl/moderna

Algorithms and thermodynamics for nucleic https://www.bioinfo.rpi.edu/zukerm/cgi-bin/ acid folding, hybridization and melting profile prediction

rna-index.cgi

Annotating tertiary motifs in RNA structures

https://www.biomath.nyu.edu/motifs

R NA/DNA folding predictions including pseudoknots and entangled helices

https://kinefold.curie.fr

If you have trouble viewing these links when copying and pasting the URLs into your browser from a pdf version o f this Appendix, please type the URL instead. This should resolve the problem.